mpiexec on fimm was upgraded from v0.75 to v0.77.
Changelog below.
Linux
GNU Scientific Library 1.6
GNU Scientific Library 1.6 was installed on fimm:/local/gsl. Older versions are available as /local/gsl-$version.
* What is new in gsl-1.6:
* What is new in gsl-1.6:
distcc + ccache on fimm
The distributed C/C++ compiler distcc and compiler cache ccache was installed on the linux cluster fimm.bccs.uib.no. Both are by default calling the system 'gcc' compiler, but can also call other compilers.
distcc will speed up compile jobs by distributing the build over a cluster of nodes (currently 3 dual cpu Pentium4 Xeon nodes = 12 virtual cpus). To speed up builds using distcc, simply specify 'make -j12 CC=distcc'.
ccache will keep a cache of object files generated during builds, and re-use them when it sees that the exact same source is being rebuilt using the exact same compiler switches. If you're doing lots of "make clean; make" on the same sources, ccache will speed it up a lot! All you need to do is to specify 'make CC=ccache'.
distcc and ccache can also be used together via 'make -j12 CC="ccache distcc"'.
distcc will speed up compile jobs by distributing the build over a cluster of nodes (currently 3 dual cpu Pentium4 Xeon nodes = 12 virtual cpus). To speed up builds using distcc, simply specify 'make -j12 CC=distcc'.
ccache will keep a cache of object files generated during builds, and re-use them when it sees that the exact same source is being rebuilt using the exact same compiler switches. If you're doing lots of "make clean; make" on the same sources, ccache will speed it up a lot! All you need to do is to specify 'make CC=ccache'.
distcc and ccache can also be used together via 'make -j12 CC="ccache distcc"'.
batch scheduler upgraded on linux cluster
The Maui scheduler was upgraded from v3.2.5 to v3.2.6p9. This should help with the fair-share scheduling and backfill. Give lower priority to those who use a lot of cputime, and prioritize the once who run less.
Check 'showq' or 'showq -i' to see what priority your job has to get started. Complain to hpc-support@hpc.uib.no if you feel you're not getting high enough priority.
NFR-users should get top priority as long as they're not using more than 75% of the cputime.
Check 'showq' or 'showq -i' to see what priority your job has to get started. Complain to hpc-support@hpc.uib.no if you feel you're not getting high enough priority.
NFR-users should get top priority as long as they're not using more than 75% of the cputime.
Intel compilers patched
The intel 'icc' and 'ifort' compilers on the linux cluster was patched with the latest fixes:
l_cc_pc_8.0.066_pe070.1
l_fc_pc_8.0.046_pe050.1
GSL upgraded on the linux cluster
GSL - GNU Scientific Librarywas upgraded to v1.5 on the linux cluster.
It's installed in /localnet/gsl/.
CC=icc ./configure --prefix=/localnet/gsl-1.5
make
make check
make install
It's installed in /localnet/gsl/.
CC=icc ./configure --prefix=/localnet/gsl-1.5
make
make check
make install
Gaussian 03 C.02 installed on linux cluster
Gaussian 02 C.02 has been installed on the linux cluster under /localnet/Gaussian/g03c02. Set up your environment for it by sourcing /localnet/Gaussian/g03c02/g03/bsd/g03.profile or /localnet/Gaussian/g03c02/g03/bsd/g03.login depending on what shell you're using. g03.profile for bourne/bash/ksh, g03.login for csh/tcsh.
OBS: You will have to be a member of the unix group "gaussian" to use Gaussian. Contact hpc-support@hpc.uib.no if you don't have, and need access.
For information on new features and bugfixes in this release, read http://www.gaussian.com/g_tech/g03_rel.htm.
OBS: You will have to be a member of the unix group "gaussian" to use Gaussian. Contact hpc-support@hpc.uib.no if you don't have, and need access.
For information on new features and bugfixes in this release, read http://www.gaussian.com/g_tech/g03_rel.htm.
Intel compilers upgraded on fire.ii.uib.no
The intel fortran and C/C++ compilers were upgraded to the latest releases on the linux cluster. This should fix problems with writing files larger than 2 GB.
intel-icc8-8.0-57
intel-ifort8-8.0-55
intel-icc8-8.0-57
intel-ifort8-8.0-55
M_Map matlab toolbox installed on fire.ii.uib.no
The M_Map toolbox with TerrainBase and GSHHS high-resolution coastline database was installed in matlab on the linux cluster. For more information see:
http://www2.ocgy.ubc.ca/~rich/private/mapug.html
http://www2.ocgy.ubc.ca/~rich/map.html
http://www2.ocgy.ubc.ca/~rich/private/mapug.html
http://www2.ocgy.ubc.ca/~rich/map.html
Power outage – machines down
There was a power outage in the machine room, and no working
UPS, so all machines crashed.
Downtime:
20040420 18:47-20:19 = 2 hours, 32 minutes
UPS, so all machines crashed.
Downtime:
20040420 18:47-20:19 = 2 hours, 32 minutes